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CARB publications from the start April 1st 2007 (updated December 2010)
Peer-reviewed articles
  1. Radutoiu S., Madsen L.H, Esben Madsen B., Jurkiewicz A., Fukai E., Quistgaard EMH,  Albrektsen A.S., James E.K, Thirup S., and Stougaard J (2007) .LysM domains mediate lipochitin-oligosaccharide recognition and Nfr genes extend the symbiotic host range. EMBO J 26, 3923- 3935.
  2. Pernille Tofteng A, Hansen TH, Brask J, Nielsen J, Thulstrup PW, Jensen KJ. Synthesis of functionalized de novo designed 8-16 kDa model proteins towards metal ion-binding and esterase activity. Org Biomol Chem. 2007 Jul 21;5(14):2225-33.
  3. Constantin G.D., Grønlund M., Johansen I.E., Stougaard J., and Lund O.E. (2008) Virus-induced gene silencing (VIGS) as a reverse genetic tool to study development of symbiotic root nodules. MPMI 21, 720-727.
  4. Birgit Kristine Hougaard B.K., Madsen L.H., Sandal N. Moretzsohn M. C.,  Fredslund J., Schauser L., Nielsen A.M., Rohde T., Sato S., Tabata S., Bertioli D.J., and Stougaard J. (2008) Legume Anchor Markers Link Syntenic Regions Between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis. Genetics 179,2299-2312.
  5. Eigo Fukai, Alicja Dorota Dobrowolska, Lene Heegaard Madsen, Esben Bjørn Madsen, Yosuke Umehara, Hiroshi Kouchi, Hirohiko Hirochika, Jens Stougaard (2008) Transposition of a 600 thousand year old LTR retrotransposon in the model legume Lotus japonicus. Plant Mol Biol., 68, 653-663.
  6. Vladimir Zhukov, Simona Radutoiu, Lene H Madsen, Tamara Rychagova, Evgenia Ovchinnikova, Alex Borisov, Igor Tikhonovich, Jens Stougaard. (2008) The pea Sym37 receptor kinase gene controls infection thread initiation and nodule development. MPMI 21, 1600-1608.
  7. Svend, Haaning, Simona, Radutoiu, Søren V. Hoffmann, Jens, Dittmer, Lise, Giehm, Daniel E. Otzen, Jens, Stougaard (2008) An Unusual Intrinsically Disordered Protein from the Model Legume Lotus japonicus Stabilizes Proteins in vitro. J.Biol.Chem. 283,31142-31152.
  8. Szczyglowski, K  and Stougaard J, (2008) Lotus genome: pod of gold for legume research. Trends in Plant Science 13, 515 - 517.
  9. D'Antuono, A.L., Ott, T., Krusell, L., Voroshilova, V., Ugalde, R.A., Udvardi, M., Lepek, V.C. (2008)Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule development.", Molecular plant-microbe interactions : MPMI, 21, 50-60.
  10. Helene Bouvrais, Philippe Meleard, Tanja Pott, Knud J. Jensen, Jesper Brask, John H. Ipsen, Softenening of POPC membranes by magainin, Biophysical Chemistry, 2008, 137, 7-12.
  11. Albert Isidro-Llobet, Ulrik Boas, Knud J. Jensen, Mercedes Alvaraez, Fernando Albericio, THAL, a Sterically Unhindered Linker for the Solid-Phase Synthesis of Acid-Sensitive Protected Peptide Acids, Journal of Organic Chemistry, 2008, 7342-7344.
  12. Rasmus Høiberg-Nielsen, A. Pernille Tofteng, Kasper K. Sørensen, Manfred Roessle, Dimitri I. Svergun, Peter W. Thulstrup, Knud J. Jensen, Lise Arleth, 3- vs. 4-Helix formation in a de novo designed protein in solution revealed by small-angle X-ray scattering: role of peptide sequence and template,2008, 9, ChemBioChem, 2663-2672.
  13. A. Pernille Tofteng, Knud J. Jensen, Lauge Schäffer, Thomas Høeg-Jensen, Total Synthesis of Insulin via Biomimetic Folding of Single-chain Precursors, ChemBioChem, 2008, 9, 2663-2672.
  14. Bertioli D., Moretzsohn M., Madsen L.H, Sandal N.,  Leal-Bertioli S., Guimarães P., Hougaard B.K, Fredslund J., Schauser L., Nielsen A.M., Sato S., Tabata S., Cannon S. and Stougaard J. (2009) An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC 10, 45.
  15. Yokota K., Fukai E., Madsen L.H., Jurkiewicz A., Rueda P., Radutoiu S.,  Held M., Hossain Md. S., Szczyglowski K., Morieri G., Oldroyd G.E.D., Downie J.A., Nielsen M.W., Rusek A.M., Sato S., Tabata S., James E.K, Oyaizu H., Sandal N. and Stougaard J. (2009) Rearrangement of actin cytoskeleton mediates invasion of Lotus japonicus roots by Mesorhizobium loti. Plant Cell 21, 267-284.
  16. Dam, S., Laursen, B.S., Ørnfelt, J.H., Jochimsen, B., Stærfeldt, H.H., Friis, C., Nielsen,  K., Goffard, N., Besenbacher, S., Krusell, L., Sato, S.,Tabata, S., Thøgersen, I.B., Enghild, J.J. and Stougaard, J. (2009) The proteome of seed development in the model legume Lotus japonicus. Plant Phys. 149, 1325-1340.
  17. Yano, K., Shibata, S., Chen, W-l., Sato, S., Kaneko, T., Jurkiewicz, A., Sandal, N., Banba, M., Imaizumi-Anraku, H., Kojima, T., Ohtomo, R., Szczyglowski, K., Stougaard, J., Tabata, S., Hayashi, M., Kouchi, H., Umehara, Y. (2009) CERBERUS, a novel U-box protein containing WD-40 repeats is required for infection thread formation and nodule development in the legume-rhizobium symbiosis. Plant J.  60, 168-180.
  18. Høgslund, N., Radutoiu, S., Krusell, V., Hannah, M.A., Goffard, N., Sanchez, D.H., Lippold, F., Ott, T., Sato, S.,Tabata, S., Liboriussen, P., Lohmann, G.V., Schauser, L., Weiller, G.F., Udvardi, M.K.,  and Stougaard, J. (2009) Dissection of symbiosis and organ development by integrated transcriptome analysis of Lotus japonicus mutant and wild-type plants. PLoS One. 2009 Aug 7;4(8):e6556´.
  19. Rodpothong, P., Sullivan, J.T., Songsrirote, K., Sumpton, D., Cheung, K.W.J-T., Thomas-Oates, J., Radutoiu, S., Stougaard , J., and Ronson C.W. (2009) Nodulation gene mutants of Mesorhizobium loti strain R7A – nodZ and nolL mutants have host-specific phenotypes on Lotus species. Molec. Plant-Microbe Inter.  22, 1546-1554.
  20. Ramsay JP, Sullivan JT, Jambari N, Ortori CA, Heeb S, Williams P, Barrett DA, Lamont IL, Ronson CW. (2009) A LuxRI-family regulatory system controls excision and transfer of the Mesorhizobium loti strain R7A symbiosis island by activating expression of two conserved hypothetical genes. Mol Microbiol. 73, 1141–1155.
  21. Ott T, Sullivan J, James EK, Flemetakis E, Günther C, Gibon Y, Ronson C, Udvardi M. (2009). Absence of symbiotic leghemoglobins alters bacteroid and plant cell differentiation during development of Lotus japonicus root nodules. Mol Plant Microbe Interact. 22, 800-880.
  22. Quistgaard E.M. and Thirup S.S. (2009) Sequence and structural analysis of the Asp-box motif and Asp-box beta-propellers; a widespread propeller-type characteristic of the Vps10 domain family and several glycoside hydrolase families. BMC Struct Biol. 2009 Jul 13;9:46.
  23. Bailly M, Blaise M, Lorber B, Thirup S, Kern D. (2009) Isolation, crystallization and preliminary X-ray analysis of the transamidosome, a ribonucleoprotein involved in asparagine formation. Acta Cryst. F., 65, 577-81.
  24. A. Pernille Tofteng, Kasper K. Sørensen, Kilian W. Conde-Frieboes, Thomas Hoeg-Jensen, Knud J. Jensen, Fmoc Solid-Phase Synthesis of C-Terminal Peptide Thioesters via Formation of a Backbone Pyroglutamyl Imide Moiety, Angewandte Chemie, 2009, 2009, 48, 7411-7414.
  25. Mikkel B. Thygesen, Kasper K. Sørensen, Emiliano Cló, Knud J. Jensen, Direct chemoselective synthesis of glyconanoparticles from unprotected reducing glycans and glycopeptide aldehydes, Chemical Communications, 2009, 6367-6369
  26. Mikkel. B. Thygesen, J. Sauer, Knud J. Jensen, Chemoselective capture of glycans for analysis on Gold nanoparticles: Carbohydrate Oxime Tautomers Povide Functional Recognition by Proteins, Chemistry – European Journal, 15, 2009, 1649-1660.
  27. Thomas Boesen and Poul Nissen. V for victory – a V1-ATPase structure revealed. EMBO rep 11, 2009, 1211-12.
  28. Mikkel B. Thygesen, Henrik Munch, Jørgen Sauer, Emiliano Clo, Malene R. Jørgensen, Ole Hindsgaul, and Knud J. Jensen, Nucleophilic Catalysis of Carbohydrate Oxime Formation by Anilines, Journal of Organic Chemistry, 2010, 75, 1752 – 1755.
  29. Emiliano Cló, Ola Blixt, and Knud J. Jensen, Chemoselective Reagents for Covalent Captur and Display of Glycans in Microarrays, European Journal of Organic Chemistry, 2010, 540-554.
  30. Cvitanich, C., Przybyłowicz, W.J., Urbanski, D.F., Jurkiewicz, A.M., Mesjasz-Przybyłowicz, J., Blair, M.W., Astudillo, C., Jensen, E.Ø., Stougaard, J., (2010) Iron and  Ferritin Accumulate in Separate Cellular Locations in Phaseolus seeds. BMC Plant Biology, 10.
  31. Bek, A.S., Sauer J.,  Thygesen M.B., Duus J., Petersen B.,  Thirup S., James E.K., Jensen K.J, Stougaard J. and Radutoiu, S. (2010) Improved characterisation of Nod factors and genetically based variation in NFR LysM domains identify amino acids expendable for Nod factor recognition in Lotus.  MPMI 23, 58-66.
  32. Lohmann, G.V., Shimoda, Y., Nielsen, M.W., Jørgensen, F.G., Høgslund, N., Sandal, N., Sørensen, K., Thirup, S., Madsen, L.H., Sato, S., Tabata, S., Stougaard, J. and Radutoiu, S. (2010) Members of the expanded Lotus japonicus gene family of LysM-RLKs are regulated by rhizobia and chitin. MPMI 23, 510-521.
  33. Fukai, E., Umehara,Y., Sato, S., Endo,M., Kouchi, H., Hayashi, M., Stougaard, J., and Hirochika, H. (2010) Derepression of the plant chromovirus LORE1 induces germline transposition in regenerated plants. PloS Genet 6(3): e1000868.
  34. Madsen L.H., Tirichine L., Jurkiewicz A. , Sullivan J.T., Heckmann A.B., Bek A.S., Ronson C.W., James E. K.  and Stougaard J. (2010) The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications, DOI:10.1038/ncomms1009.
  35. Held, M., Hossain, Md S., Yokota, K. , Bonfante, P., Stougaard, J., and Szczyglowski, K. (2010) Common and not so common symbiotic entry. Trends in Plant Science in press.
  36. Blaise M, Bailly M, Frechin M, Behrens MA, Fischer F, Oliveira CL, Becker HD,
    Pedersen JS, Thirup S, Kern D. Crystal structure of a transfer-ribonucleoprotein
    particle that promotes asparagine formation. EMBO J. 2010 Aug 17. [Epub ahead of
    print] PubMed PMID: 20717102.
  37. Mark Held, Md Shakhawat Hossain, Keisuke Yokota , Paola Bonfante, Jens Stougaard and Krzysztof Szczyglowski. (2010) Common and not so common symbiotic entry. Trends in Plant Science 2010, 15, 540-5.
  38. Nautrup-Pedersen, G., Dam, S., Laursen B.S., Siegumfeldt, A.L., Nielsen, K.,  Gafford, N., Stærfeldt, H.H., Friis, C., Sato, S., Tabata, S., Lorentzen, A., Roepstorff, P., Stougaard, J. (2010) Proteome analysis of pod and seed development in the model legume Lotus japonicus. J. Proteome Res. 9, 5715-5726.
  39. Madsen, E., Antolín-Llovera, M., Grossmann, C., Ye, J., Vieweg, S., Broghammer, A., Krusell, L., Radutoiu, S., Jensen, O., Stougaard, J., Parniske, M. (2010) Autophosphorylation is essential for in vivo function of the Lotus japonicus Nod Factor Receptor 1 and receptor mediated signalling in cooperation with Nod Factor Receptor 5. In press.
  40. Krusell, L., Sato, N., Fukuhara, I., Koch, B.E.V., Grossmann,C., Okamoto, S., Oka-Kira, E., Otsubo, Y., Aubert, G., Nakagawa, T., Sato, S., Tabata, S. Duc, G., Parniske, M., Wang, T., Kawaguchi, M., Stougaard, J. (2010) The Clavata2 genes of pea and Lotus japonicus affect autoregulation of nodulation and shoot architecture. Accepted
Book chapters and proceedings
  1. Schauser, L., Udvardi, M., Tabata, S., and Stougaard J. (2008) Legume genomics relevant to N2 fixation. In Nitrogen-fixing Leguminous Symbiosis (Eds. Dilworth M.J., James E.K., Sprent J.I., Newton W.E) Springer AA Dordrecht The Nertherlands.
  2. Cristina Cvitanich, Wojciech J. Przybyłowicz, Jolanta Mesjasz-Przybyłowicz, Matthew W. Blair, Erik Ø. Jensen, and Jens Stougaard, "Iron, zinc, and manganese distribution in mature soybean seeds" (2009). The Proceedings of the International Plant Nutrition Colloquium XVI. Paper 1231. http://repositories.cdlib.org/ipnc/xvi/1231. (
  3. Niels Sandal, Lene H. Madsen, Simona Radutoiu, Leïla Tirichine, Lene Krusell, Keisuke Yokota, Cristina Cvitanich, Birgit K. Hougaard, Anita S. Albrektsen, Anne B. Heckmann, Eigo Fukai, Paloma Rueda, Sabine Zitzenbache, Katarzyna Zak, Cristina Pacios Bras, Herman Spaink, Shusei Sato, Satoshi Tabata, Jens Stougaard. (2009) CHARACTERIZATION OF PLANT SYMBIOTIC GENES WITH THE HELP OF THE MODEL LEGUME Lotus japonicus.  Would Soybean Research Conference Beijing 2009. (
  4. Knud J. Jensen (Ed.), Peptide and Protein Design for Biopharmaceutical Applications, Wiley-VCH
  5. Knud J. Jensen and Jesper Brask, Carbohydrates in Peptide and Protein Design. In Peptide and Protein Design for Biopharmaceutical Applications, Wiley-VCH (Ed. Knud J Jensen).
  6. Knud J. Jensen, De Novo Design of Proteins. In n Peptide and Protein Design for Biopharmaceutical Applications, Wiley-VCH (Ed. Knud J Jensen).
PhD theses
  1. Esben M.H. Quistgaard (2007) Structural Studies of Sortilin-Ligand Complexes and Characterization of the LysM Arrays of NFR1 and NFR5. Aarhus University
  2. Birgit Kirstine Hougaard (2007)  Bridging genetic maps of model and crop legumes using legume anchor markers & Biodiversity at the PvNFR5 locus
  3. Svend Haaning (2008) Structural and Functional Aspects of LjIDP1, Aarhus University
  4. Patsarin Rodpothong (2008) Host-specific Nod factor requirements for nodulation of Lotus species by Mesorhizobium loti. University of Otago.
  5. Gitte Vestergaard Lohmann (2009) Identification and characterization of the LysM-RLK gene family in Lotus japonicus. Aarhus University
  6. Anita Søndergaard Bek (2010) Nod factor receptors and their Nod factor ligands in Lotus spp. Aarhus University
MSc theses
  1. Astrid Leick Siegumfeldt (2007) Proteom analysis of Lotus japonicus pod wall. Aarhus University
  2. Anita S. Albrektsen (2007) Nod-factor receptors in symbiotic nodule development and localisation of Nod factor receptors. Aarhus University
  3. Svend Dam (2007) Seed development in Lotus japonicus development and proteomics. Aarhus University
  4. Simon Kelly (2007) The role of exopolysaccharides in the Mesorhizobium-Lotus symbiosis. University of Otago.
  5. Svend Dam (2008) The Proteome of the model legume Lotus japonicus seed. Part A Aarhus University
  6. Nicolai Nameth Maolanon (2008) Chemo-enzymatic synthesis of nod factors for receptor- ligand studies,
  7. Søren Roi Midtgaard (2009) Studies of bacterial proteins involved in symbiosis and pathogenesis. Aarhus University
  8. Mette Wibroe Nielsen (2009) Functional characterisation of LysM RLK genes in Lotus japonicus. Aarhus University
  9. Fabrice Laroche (2009) Synthesis. Aarhus University
  10. Guilhem Reyt (2009) Characterisation of ethylene emisson levels in various nitrogen fixation mutants of the model legume Lotus japonicus. Universite´Montpellier 2 and Aarhus University.
BSc reports
  1. Jesper Bjerg Christiansen (2007) Expression and analysis of the NRL6 promoter in transformed Lotus japonicus roots. Aarhus University
  2. Sarah Morgan (2007) Surface Polysaccharides as Signaling Molecules in the Mesorhizobium-Lotus Symbiosis. University of Otago.
  3. Henritte Eenberg (2008) Udvikling af anker markører til brug i bælgplanter. Aarhus University
  4. DennisBerg Holt (2009) Genetics of nodulation in the actinorhizal plant Datisca glomerata. Aarhus University
  5. Winnie S. Füchtbauer (2009) The role of pathogen dispersal and host availability on the spread of a  soli-borne plant pathogen. Aarhus University.
  6. Maja Gro Rydahl (2009), Nod factor characterization and purification. University of Copenhagen.
  7. David Jul Pedersen (2009), Characterization of LysMD2a from Zebrafish. Aarhus University
  8. Sheena R. Rasmussen (2010), The role of Lotus LysM receptor genes in the establisment of symbiosis with Arbuscular Mycorrhiza. Aarhus University

 
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